In coexistance model; want to run bulk conversion file agian

Summary

Our incremental integration has become out of sync. Would like to run a full data publish from source system to get back on track. Any one run into any issues doing something like this?

Content

We are using Fusion Performance Management in coexistence with PeopleSoft. Our coexistence started with a 'Bulk' HDL file that included every active employees' data and is continuing with incremental files that only include employees that have had changes since the last data extract from PeopleSoft. Unfortunately, the incremental processes have not been run regularly enough and we are concerned that data has been lost. We would like to just start over with a bulk file. Has anyone experienced any issues doing this or know if there is any best practice recommendations from Oracle?