How do to update hierarchy without updating any eligibility in Compensation?

Summary:

How do to update hierarchy without updating any eligibility in Compensation?

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When trying to refresh just the hierarchy using actual process run date, it keeps giving me an error. I am not checking all boxes, only those related to hierarchy, as that is the problem here. It isn't related to due date, it is related to people having the wrong hierarchy.

In production, there are 244 employees that are missing an HR Contact (the primary manager) and 1,449 employees that are missing a Regional Controller (the next level approver). This is not something that I can manually update given how time consuming that will be.