Auto Apply of receipts and AR Invoices

Summary:

We have a deference of .01 approximately between the AR Invoice and the Receipt.Due to this we are unable to use the auto apply functionality . For every receipt we have to go manually and we have to accept manually. Here i'm seeking a solution how to make this automated for future transactions and how to accept all of them at once for the past transactions. we can not do this manually as the business is having aproximately 5000 transactions per day. Please guide and suggest.

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