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EFT payments for Memorized Transactions

We are evaluating the ACH options to utilize the EFT Customer Payment drafts.  However, the rep at Coastal Software didn't know how the EFT works if we utilize the memorized transactions for our invoices, so I'm hoping someone here have experience with this and would be able to explain this to me.  I just want to know if it's an automated process, instead of having to spend more time going through each invoice to "accept payment" since the memorized invoices are already an automated process.  Any assistance on this will be greatly appreciated.  Thanks.

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