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How can I clear system transactions where the cash nets to zero (no entry on bank statement)

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How can we clear/auto-reconcile net zero cash system transactions in the bank reconciliation.

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We have many journal entries transferring cash from one fund to another so the net effect to cash is zero (we use a pooled cash account). As such, there is no transaction on the bank statement to clear those transactions against. Is there a way to have the system either exclude or auto-reconcile journal entries that have a zero net cash?

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